1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttttcttgtttcaaagtatttgtacttatgctaccatcttgataagcacgtatgtcaccaagtggactcagaaaatgttttgttctaatgtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCCGCTTGTATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
species | Glycine max |
transcript | GLYMA09G28650.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG AATTTGGGATGCCTAEST: gi|192309233|gb|FG999124.1|FG999124
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagA-TTTGGGATGCCTA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|58025237|gb|CX711978.1|CX711978
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|58017480|gb|CX704222.1|CX704222
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|209714673|gb|BW674236.1|BW674236
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACA-GCATTTAAGACTGCCATTGAAEST: gi|208046900|gb|GD846461.1|GD846461
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|22927071|gb|BU544210.1|BU544210
genomic: TGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|192309232|gb|FG999123.1|FG999123
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|26048688|gb|CA785141.1|CA785141
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|207708468|gb|GD691466.1|GD691466
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|209710278|gb|BW676340.1|BW676340
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|193588325|gb|FK544060.1|FK544060
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGEST: gi|209714674|gb|BW674237.1|BW674237
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTG
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCAC-AGCATTTAAGACTGCCATTGAAEST: gi|214008281|gb|DB989823.1|DB989823
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTAACACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|193595835|gb|FK552656.1|FK552656
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|193529449|gb|FK487832.1|FK487832
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTAEST: gi|207786727|gb|GD757958.1|GD757958
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|208095316|gb|GD892046.1|GD892046
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|208209540|gb|GE001809.1|GE001809
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|207702132|gb|GD682005.1|GD682005
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|209725417|gb|BW658279.1|BW658279
genomic: TTGGTATAGATGGAAATACTGGCAGTATCACTGACATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: CATGAAAGAGCGCAAG ATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
genomic: CATGAAAGAGCGCAAGgtacttcacg ... gtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
agcacgtatgtcaccaagtggactcagaaaatgttttgttctaatgtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCCGCTTGTATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
ttctaat putative branch site (score: 2)
aaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcttgtttcaaagtatttgtacttatgctaccatcttgataagcacgtatgtcaccaagtggactcagaaaatgttttgttctaatgtgatgttagATTTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCCGCTTGTATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT