1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgtccccattcttagtaaattttcacactataatttttcctttatcaattattttttaccggttaaatgtgtttatacatttgctgaaaattttgtgattgtgaaccaacttttaattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
species | Glycine max |
transcript | GLYMA09G25160.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGEST: gi|58020188|gb|CX706930.1|CX706930
genomic: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGTgtatgtcccc ... taattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
EST: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGEST: gi|58023814|gb|CX710555.1|CX710555
genomic: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGTgtatgtcccc ... taattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
EST: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAGEST: gi|21594281|gb|BQ610112.1|BQ610112
genomic: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGTgtatgtcccc ... taattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
EST: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGT CTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
genomic: CTACCTTCATACTTGAACTCCGAGAAGAATCTCCAGAACCTTTCAAGAGTgtatgtcccc ... taattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
gtgtttatacatttgctgaaaattttgtgattgtgaaccaacttttaattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
ttttaat putative branch site (score: 3)
ctttt CT-rich tract
aacttttaattaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtccccattcttagtaaattttcacactataatttttcctttatcaattattttttaccggttaaatgtgtttatacatttgctgaaaattttgtgattgtgaaccaacttttaattaacagCTGGATGATTTGAAGGATATTGGGCTTTCAGCAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG