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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attgaaacttttatattcatgaaacagttcttgatctttcttatttattagttgtaaaactggaagtattatgataagatctaaatgccttactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCGCAGCTCCATGAGGCTAGTATCATTCCATAGTCTTTTCCAGTTGTGGTG

Basic information

species Glycine max
transcript GLYMA09G01270.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193560435|gb|FK517194.1|FK517194
EST:     GAAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: G-AAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208162485|gb|GD962292.1|GD962292
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCGAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193628042|gb|FK572708.1|FK572708
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208170378|gb|GD968857.1|GD968857
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|15202674|gb|BI425525.1|BI425525
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208157945|gb|GD957810.1|GD957810
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193421161|gb|FK391378.1|FK391378
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193422949|gb|FK388070.1|FK388070
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|14011019|gb|BG725941.1|BG725941
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|207839569|gb|GD811750.1|GD811750
EST:     GAAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATT
genomic: GAAA-TTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATT
EST: gi|193676085|gb|FK620071.1|FK620071
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|207848848|gb|GD818879.1|GD818879
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|7693176|gb|AW761273.1|AW761273
EST:     GAAATTTCTTGAAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GAAATTTCTTG-AAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208300214|gb|GE098901.1|GE098901
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|7232656|gb|AW568010.1|AW568010
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTG
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTG
EST: gi|193414084|gb|FK376118.1|FK376118
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193487219|gb|FK450912.1|FK450912
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193576429|gb|FK530796.1|FK530796
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTG
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTG
EST: gi|298184616|gb|HO029829.1|HO029829
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208160460|gb|GD964650.1|GD964650
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193575951|gb|FK532096.1|FK532096
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208268587|gb|GE072074.1|GE072074
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193387075|gb|FK352478.1|FK352478
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193375472|gb|FK341655.1|FK341655
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208178383|gb|GD978336.1|GD978336
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGT
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGT
EST: gi|31464504|gb|CD406532.1|CD406532
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208158655|gb|GD956056.1|GD956056
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193436682|gb|FK400869.1|FK400869
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208301747|gb|GE098977.1|GE098977
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|193341566|gb|FK308878.1|FK308878
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
EST: gi|208050468|gb|GD845551.1|GD845551
EST:     GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAG                         GGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC
genomic: GGAAATTTCTTGAAGATGGAGACGAAGTCATCTTAACTGGATATTGCAAGgtaacaatca ... tactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagttgtaaaactggaagtattatgataagatctaaatgccttactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCGCAGCTCCATGAGGCTAGTATCATTCCATAGTCTTTTCCAGTTGTGGTG
                                         gccttac  putative branch site (score: 3)
                                          ccttacttt  CT-rich tract
                  aagtattatgataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attgaaacttttatattcatgaaacagttcttgatctttcttatttattagttgtaaaactggaagtattatgataagatctaaatgccttactttgcagGGAAATGGTTACTCTGTTGGGTTTGGTACTTGCTCAGGCAAGATTGTACCCGCAGCTCCATGAGGCTAGTATCATTCCATAGTCTTTTCCAGTTGTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC