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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggagaagaagcttttgtttccttcatgcacagctgaacattgtttttgtatcttttatttctcacttctttgattaccatcattgagttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCTGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG

Basic information

species Glycine max
transcript GLYMA09G00970.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00970.1 (Glycine max), 3'ss of exon 13
lower sequence: AT4G22130.2 (Arabidopsis thaliana), 3'ss of exon 8
gttggagaagaagcttttgtttccttcatgcacagctgaacattgtttttgtatcttttatttctcacttctttgattaccatcattgagttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCTGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
                  ||       ||| | ||    | |||   | |   |     ||||      ||||| ||     |   ||  | | ||||||| ||||||||  |||| ||||||||||| || || ||||| ||||||||| | || ||| | ||||| || ||||||||||| ||||  ||||| || |
------------------gtaataacaatggaaagaatcagatttaatctaattgaaacattttctgagtctttcat---ggtttatgcatgtcaacagGTTTCAACTCAAGTGGTAGGTTCATTTGGATACAGCGCTCCAGAGTTTGCACTGTCGGGAATTTACACAGTGAAAAGTGATGTATACACTTTTGGAGTAG

upper sequence: GLYMA09G00970.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 13
gttggagaagaagcttttgtttccttcatgcacagctgaacattgtttttgtatcttttatttctcacttctttgattaccatcattgagttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCTGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
||     ||   | ||   || |  || |    |  | |   ||  | ||     || ||| |||   |  |   | |    ||  |||  ||| |||||| |||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||||| ||||| ||||||||||||||||
gtaaataaatggggttgaattcctgtcttaagtattttacagtttctctt-----ttgtatgtctgcttgatacaaattgtttctatgatgtttgacagGTTTCAACTCAGATGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCTTTATCTGGTATATACACTGTAAAAAGCGATGTGTACAGCTTTGGGGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193362466|gb|FK324870.1|FK324870
EST:     ACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAG                         GTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCA
genomic: ACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAGgttggagaag ... gttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCA
EST: gi|23731723|gb|BU764001.1|BU764001
EST:     ACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAG                         GTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCA
genomic: ACCTGTCTGACTGTGGTTTAGCTGCTTTGACACCAAACACTGAGCGGCAGgttggagaag ... gttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgtatcttttatttctcacttctttgattaccatcattgagttttaacagGTATCAACTCAGATGGTCGGTTCATTTGGTTATAGTGCTCCTGAGTTTGCATTATCTGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGG
     tgtatcttttattt  TA-rich tract