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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttttttaaataattcttaaccccctcattttttttatttattttctgtctttctcattgtccttgatctctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGAGATAAAACTTGCTCCCATGGTTAATGGCCATCAATCCGAAGCCATGCGG

Basic information

species Glycine max
transcript GLYMA09G00470.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588196|gb|AW703997.1|AW703997
EST:     AAGGATATGCTCCA                         CAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AAGGATATGCTCCAgtaatttttt ... ttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
EST: gi|26057585|gb|CA800499.1|CA800499
EST:     AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCA                         CAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA
genomic: AATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCAgtaatttttt ... ttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacaaacttctcttttttttttttttttaaaaaaaaaactgtgttctgtatagCAAAATAGAAGAGAAACGAGGAGTGGCTGTGACTGATTCTGGAACGCCAGAGATAAAACTTGCTCCCATGGTTAATGGCCATCAATCCGAAGCCATGCGG
 ctctgac  putative branch site (score: 3)
     aaacttctcttttttt  TA-rich tract