1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atcgactaggttgtaattttatgtgaacttatcattgcttttttatatgtctacttggtggtttttatgtgaacttatcaatgctattttcatattgcagGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTCTTAAAGCACCCTCTGGAGGAAAGAACAGTAGCAAATTCAGACAGTGAGA
species | Glycine max |
transcript | GLYMA08G45800.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCCGAAGATATCACTGAG GTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTCEST: gi|209700536|gb|BW667310.1|BW667310
genomic: CAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCCGAAGATATCACTGAGgtagttggaa ... catattgcagGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTC
EST: CAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCCGAAGATATCACTGAG GTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTC
genomic: CAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCCGAAGATATCACTGAGgtagttggaa ... catattgcagGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTC
tatgtctacttggtggtttttatgtgaacttatcaatgctattttcatattgcagGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTCTTAAAGCACCCTCTGGAGGAAAGAACAGTAGCAAATTCAGACAGTGAGA
ctattttc CT-rich tract
tattttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcgactaggttgtaattttatgtgaacttatcattgcttttttatatgtctacttggtggtttttatgtgaacttatcaatgctattttcatattgcagGTGAATCAAAAGATGATCCTTACACTAACAGCTAGTATAATGTATTGGTTCTTAAAGCACCCTCTGGAGGAAAGAACAGTAGCAAATTCAGACAGTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - ggttgta
- - - - - - - - - - -tgtgaac
- - - - - - - - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct