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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcattctcttttgtattgatgttgcaagtgtgtgcaacctaattgccgttactgagtagctcacataataataataagattggatttgaaagaaattgattcttggttttgctggttttcatttgaaataaccttggaacattttcatccttagGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 13
gtttgtcattctcttttgtattgatgttgcaagtgtgtgcaacctaattgccgttactgagtagctcacataataataataagattggat-ttgaaagaaattgattcttggttttg-ctggttttcatttgaaataaccttggaacattttcatccttagGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT
                                                         |  | |  |  || | |  ||   |     |||  || || ||| | | | |  | |||| ||| | |  |  |    |||   |  |||  |||| ||   ||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||||| || ||||||||||||
---------------------------------------------------------tatgcaa-ttgcaaatttttatcgattcctgatactgcaaaaaactaagtttaagatttgactgttctgaaccttttctaattgtctaaccatttcttc---agGGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311442|gb|CD396645.1|CD396645
EST:     TGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG                         GGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTG
genomic: TGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGgtttgtcatt ... tcatccttagGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTG
EST: gi|13240468|gb|BG359777.1|BG359777
EST:     TGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAG                         GGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTG
genomic: TGATATCTCAGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGgtttgtcatt ... tcatccttagGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttggttttgctggttttcatttgaaataaccttggaacattttcatccttagGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTCCTTAATCTCATATCT
                          aaataac  putative branch site (score: 2)
                                          ttttcatcctt  putative PPT
                ttttcatttgaaataa  TA-rich tract