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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctaatagcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcagGTATCTGGCCATGCTAAGAAAAGCTTCCAAGGAGAATGTTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTACTGGTGAATGTAGGGCT

Basic information

species Glycine max
transcript GLYMA08G24290.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 10
gtgagcctaat-agcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattagg--ttatttatctctaacttcagcatttgtaaacatgttt-cttcagGTATCTGGCCATGCTAAGAAAAGCTTCCAAGGAGAATGTTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTACTGGTGAATGTAGGGCT
|||||  || | | | | || | | | ||  |  ||  |  ||     |||   || | || |  | ||  |||    |   | |||  |    |  |  |    |||  | | |  ||||||||| |  | ||| ||||||||||| ||||||| ||| ||||||| || || || || || || || |||||||||||||||||||||||||||| | ||
gtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcagGTATTTATCAATGTTAAGAAAAGCTGCCAAGGAAAATATTGTGGTCGACCTTACTAATTTATATGACCATTTCTTTGTATCTACTGGTGAATGTAAGTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtgattaggttatttatctctaacttcagcatttgtaaacatgtttcttcagGTATCTGGCCATGCTAAGAAAAGCTTCCAAGGAGAATGTTGTGGTTGATCTCACCAACTTGTACGATCATTTCTTTGTATCTACTGGTGAATGTAGGGCT
                    ctctaac  putative branch site (score: 2)
                                            tgtttcttc  putative PPT
      attaggttatttat  TA-rich tract