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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttttcctttttcttgaattttctatgctgggttaatgatttcatctacgttgtgttggtttactttactctttttacatttttgactaatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTATAAAGATGCTTGCAACGATTACACTAGTAATGGCTCCAGTCTTCCTGTGA

Basic information

species Glycine max
transcript GLYMA08G24120.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022630|gb|CX709371.1|CX709371
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|193570132|gb|FK524853.1|FK524853
EST:     TGGAGGACAAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: TGGAGG-C-AAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|209725686|gb|BW663177.1|BW663177
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|120529405|gb|EH257539.1|EH257539
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|21256880|gb|BQ453768.1|BQ453768
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGTTTTTTCAATCCATGTCCTTA
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTT-CAATCCATGTCCTTA
EST: gi|6200879|gb|AW152979.1|AW152979
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|58022340|gb|CX709081.1|CX709081
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|214004825|gb|DB988834.1|DB988834
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|213597487|gb|DB977794.1|DB977794
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
EST: gi|214008302|gb|DB989844.1|DB989844
EST:     CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATAC                         AGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT
genomic: CTTGGAGGCAAGGGAAGTGAGGCTCACAAAGCAGCCATAACTGGAGATACgtaagttact ... aatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctacgttgtgttggtttactttactctttttacatttttgactaatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTATAAAGATGCTTGCAACGATTACACTAGTAATGGCTCCAGTCTTCCTGTGA
                                         gactaat  putative branch site (score: 2)
                            tttttacatttttgac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgttttcctttttcttgaattttctatgctgggttaatgatttcatctacgttgtgttggtttactttactctttttacatttttgactaatttggcagAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCAATCCATGTCCTTATAAAGATGCTTGCAACGATTACACTAGTAATGGCTCCAGTCTTCCTGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG