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...tcttgcttcctttgatatttatctaatgctggacaaccatttagtatcccaagcaactattctgcctactcatgtattatcacttgttcacatttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGACCCTGAAGTATTTTTATCTTCTCTTCTCACCTTCTTCAGTCATCTCAT
species | Glycine max |
transcript | GLYMA08G23730.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|17020914|gb|BM091948.1|BM091948
genomic: GCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|120494883|gb|EH223050.1|EH223050
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|208258043|gb|GE050990.1|GE050990
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGGATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|22932226|gb|BU549365.1|BU549365
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|192311621|gb|FK003104.1|FK003104
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|27445891|gb|CA953014.1|CA953014
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|120529222|gb|EH257356.1|EH257356
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|151407654|gb|EV277469.1|EV277469
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGEST: gi|192311620|gb|FK003103.1|FK003103
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
EST: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGAT GTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
genomic: CTTTTGAGAAGAACTCCCGCATAGAGTCAGGCTATGTTGGACTGAAGGATgtaagcacac ... catttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAG
atcccaagcaactattctgcctactcatgtattatcacttgttcacatttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGACCCTGAAGTATTTTTATCTTCTCTTCTCACCTTCTTCAGTCATCTCAT
catttctc CT-rich tract
atgtattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgcttcctttgatatttatctaatgctggacaaccatttagtatcccaagcaactattctgcctactcatgtattatcacttgttcacatttctcagGTTAATAGTGGAGTCAAAGACAACATGATGCAAAGCTTCTTTCTTGCGGAGACCCTGAAGTATTTTTATCTTCTCTTCTCACCTTCTTCAGTCATCTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -tgcttcc
- - - - - - - - - - - - - tgctgga
- - - - - - - - - - - - - - - - -caaccat
- - - - - - - - - - - - - - - - - - - - - - - -cccaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttgt