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...gatcttctcttcaactatggaagtttcaatttcaacaccaaacattagacatgacatttggacggacctttctttaatcttccgttccccttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAG
species | Glycine max |
transcript | GLYMA08G20930.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGG GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGEST: gi|26059109|gb|CA802023.1|CA802023
genomic: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGgtgagatttg ... ttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
EST: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGG GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGEST: gi|18735417|gb|BM528753.1|BM528753
genomic: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGgtgagatttg ... ttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
EST: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGG GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGEST: gi|193476809|gb|FK439040.1|FK439040
genomic: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGgtgagatttg ... ttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
EST: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGG GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGEST: gi|10254178|gb|BE821944.1|BE821944
genomic: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGgtgagatttg ... ttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
EST: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGG GTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
genomic: GGAAAGCTAGTGTTCTCATTGCTCCTGCAATGGCTGCCGGTGCTGGAGGGgtgagatttg ... ttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGG
tagacatgacatttggacggacctttctttaatcttccgttccccttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAG
ctttaat putative branch site (score: 4)
cctttctttaatcttc CT-rich tract
tttctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcttctcttcaactatggaagtttcaatttcaacaccaaacattagacatgacatttggacggacctttctttaatcttccgttccccttgcttgcagGTTGTGGCTGGAGAACTTGAACTGAATCATGAATGCAGTTTGATGCACTGGTCACCAGAGGACTTTGAATCTAAATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA