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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcttcaatctattcatagcttggtgaacatttccatttttatgctatatcttctcataagcccaataacttttttatcgttttcctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGTAATGTTCCTTAATGAAAAAGTTTTGA

Basic information

species Glycine max
transcript GLYMA08G16150.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16150.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G48030.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaactcttcaatctattcatagcttggtgaacatttccatttttatgctatatcttctcataagcccaataacttttttatcgttttcctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGTAATGTTCCTTAATGAAAAAGTTTTGA
|| ||| | | |    |  |     |   | ||| |  |||  |||   ||| |  |  | |   | ||||   | |||    || |||||||   |||||  | ||||||||||| ||||| |||||||||||  |||||||||| || || ||  | ||| | || |||                            
gtgactttactaaa-gtcaactttctaacggacagt--catagtta-attatttacttgcgt---ctcaat---tatttggctgtattccttt--tcagGTTCGTGAAGATCCTGTGTTCCGCAGAGAAGGATCGGATATTCATGTGGACGCGGTTCTCAGTGTTACCCAG----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348597|gb|BM893129.1|BM893129
EST:     CTTTATGTTACCATCAAG                         GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: CTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: gi|208112259|gb|GD913672.1|GD913672
EST:     GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAG                         GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: gi|207750723|gb|GD723948.1|GD723948
EST:     GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAG                         GTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACCATCAAGgtaactcttc ... ctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgctatatcttctcataagcccaataacttttttatcgttttcctttgtgcagGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTGTCTTAAGTATCACTCAGGTAATGTTCCTTAATGAAAAAGTTTTGA
                       caataac  putative branch site (score: 2)
                             cttttttatcgttttc  CT-rich tract
                        aataacttttttat  TA-rich tract