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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgttttccatgattattactgttagattcaatagttttactcatatagccgatgtaagatatgtatgtttttctttgcttttgtagGGAGAATCACAACCTGGGAAAGCGCCATGGCATGGG

Basic information

species Glycine max
transcript GLYMA08G14040.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207752629|gb|GD724957.1|GD724957
EST:     TTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG                         GGAGAATCACAACCTGGGAAAGCGCCATGGCATGGGG
genomic: TTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAGgtaatttgtt ... gcttttgtagGGAGAATCACAACCTGGGAAAGCGCCATGGCATGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttactcatatagccgatgtaagatatgtatgtttttctttgcttttgtagGGAGAATCACAACCTGGGAAAGCGCCATGGCATGGG
                                  tgtttttctttgcttt  CT-rich tract
                           atatgtatgttttt  TA-rich tract