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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaagcgcaaagtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATATCGGGTCCACACTTGGGTTATATGTATAGTTCAAACTCTCTATTCAATTC

Basic information

species Glycine max
transcript GLYMA08G08190.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtatctaagcgcaa-agtttttaaggataactactattcacaaaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATATCGGGTCCACACTTGGGTTATATGTATAGTTCAAACTCTCTATTCAATTC
     || |  |   |||||| |    | | | | ||   |  |  |||  ||  |  |  |  |     | | ||  ||| |||         ||||||||   ||||| || || ||||||||||| ||||||||||| || ||||| || ||||||||||| ||| |||||||||||||||||||||| |||||
----gtaggtactctagttttgattcttgaatgccatgttcttaggttagtctgtgatatattgctgatgtctgttgctttgttttgg------cagAGAGCTCTATGGAACCTTACCTAAGATACTTGCATACATATGTTTCTATATCTGGCCCACACTTGGGATATCTGTATAGTTCAAACTCTCTATTTAATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021879|gb|BM092913.1|BM092913
EST:     CTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAG                         AGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATAT
genomic: CTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagc ... ataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATAT
EST: gi|10231956|gb|BE800844.1|BE800844
EST:     CTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAG                         AGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATAT
genomic: CTTTGTTGGTCATTCTATTGGGAATCTCATTATCAGGACAGCCTTGACAGgtatctaagc ... ataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattaaactagggaaagtaacatgcttattttattttatttaaataattccagAGAGCGTCATGGAGCCATATCTAAGATACTTACATACATATGTCTCCATATCGGGTCCACACTTGGGTTATATGTATAGTTCAAACTCTCTATTCAATTC
                aagtaac  putative branch site (score: 2)
               aaagtaacatgcttat  TA-rich tract