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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacaaaatggaacattttcttcactatatgtgtgacaatcttatgccagtgatttcattttaactgcaagtttacattgagtactaaattatttgcagAAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTTATCCTTGGATTTGGACAAATGGGCCAG

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.3 (Glycine max), 3'ss of exon 13
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 13
-------aaaacaaaatggaacattttctt-cactatatgtgtgacaatcttatgccagtgatttcattttaactgcaagtttacattgagtactaaattatttgcagAAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTTATCCTTGGATTTGGACAAATGGGCCAG---------------------------
        | | | |||  |||||||||||  |  |||| |  ||   | |||   ||    | |  || |   ||||    |  | |||    | |||| |||||||||||       |  ||| ||| | || ||  |  |||||||||| ||||| || |||||||||||||||||||| |||                           
tcttctggatagacaatt-aacattttcttatatcatatattggatg-tattacttcaactgtatttttctg--tgca----tgaactgaaacttgaattctttgcagAAAC------CTGATGACACGATCAATTTTGATGTTAGTGAACCAGTTGTCATTCTTGGATTTGGACAAATGGGTCAGGTACATCATTTTTATGAATTAAGTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900248|gb|BE609216.1|BE609216
EST:     CTGGAAGAAGGGCTGCTAGCTTTATTGAAGAAAATTTTGACCCTGAGAAT                         AAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTT
genomic: CTGGAAGAAGGGCTGCTAGCTTTATTGAAGAAAATTTTGACCCTGAGAATgtatgtcttt ... ttatttgcagAAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccagtgatttcattttaactgcaagtttacattgagtactaaattatttgcagAAACAGAATGTTTCTGAGACGGTTAACTTCAACATTAGTGAACCCGTTGTTATCCTTGGATTTGGACAAATGGGCCAG
                                      tactaaa  putative branch site (score: 1)
                                    agtactaaattattt  TA-rich tract