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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatgcagtgcctcactactcttatttaacattcttttcaaaatatactaataaaggtttttatgcatgtatttattgccgtagGTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAAT

Basic information

species Glycine max
transcript GLYMA08G03080.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03080.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0065g00450.t01 (Vitis vinifera), 3'ss of exon 12
gtgag-aatgcagtgcctcacta-ctcttatttaacattcttttca--aaatatactaataaaggtttttatgcatgtatttattgcc------------gtagGTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAAT
|||||  ||    | || | ||  |||  ||||       ||  |   || || | |  |   | | ||     || || |  || ||             ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
gtgagtgatttgatccccccctctctcccattttcttccattaccgttaattagattgttttggatcttatgagatttagtgtttcccctttgttaataaatagGTACTTCGAACAGGGCAGATAGATTTGTCTCAGTTTGGAATTGATCCAAGTAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21675496|gb|BQ627847.1|BQ627847
EST:     AGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTAT                         GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGT
genomic: AGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATgtgagaatgc ... attgccgtagGTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGT
EST: gi|18039244|gb|BM307538.1|BM307538
EST:     AGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTAT                         GTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGT
genomic: AGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCGTTTACTTATgtgagaatgc ... attgccgtagGTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcttttcaaaatatactaataaaggtttttatgcatgtatttattgccgtagGTACTTCGAACAGGACAGATAGACTTGTCTCAGTTTGGAATTGATCCAAGTAAAT
                tactaat  putative branch site (score: 1)
     ttttcaaaatatacta  TA-rich tract