Sequence
atgc intronic sequence ATGC exonic sequencegtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA
Basic information
species | Glycine max |
transcript | GLYMA07G35280.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G35280.2 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G100707_T01 (Zea mays), 3'ss of exon 12
------gtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA
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gtactcaccttgcagctaaaccaaaa-acattctttgtgctgctccgtgcttgaa-atttctgttttggtttgtttcaatt---agGTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCA
upper sequence: GLYMA07G35280.2 (Glycine max), 3'ss of exon 13
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 3'ss of exon 13
----------------------------------gtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactt-tcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA
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gtaaagtcctgaattatttcaaagtcccaaccttttccgccgatagactcgagtcat-tctaaagaagtctaatttgctgtcattttcttgttccatttcgaaaaatccgataagGTATGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAATACGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCA
upper sequence: GLYMA07G35280.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 12
------------gtacagtattgaaatcaaagcatatttaatgacctc----atatgtgtatgtatatat-ttgtg-------ttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA
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gtaagtccaaaagtatcctccttgaccaaatgattatatcctgacctctgtgacttctgtttgaaagcttattgtaagtgaaattgttgggaaatggtctctagGTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22523658|gb|BU082469.1|BU082469EST: TCGGACTAAAAGCAGCAGTATTTGGACTTCAGATGTTTGTGGACAGTGTG GTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATAC
genomic: TCGGACTAAAAGCAGCAGTATTTGGACTTCAGATGTTTGTGGACAGTGTGgtacagtatt ... taactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCA
agttaac putative branch site (score: 3)
ctttc CT-rich tract
tatgtatatatttgtg TA-rich tract