Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGTTGAGTC

Basic information

species Glycine max
transcript GLYMA07G35280.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35280.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G100707_T01 (Zea mays), 3'ss of exon 12
------gtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGTTGAGTC
           | |   ||| ||||  | |||   ||  ||  |  |||  || | || | ||| ||  |     | || |   |||| ||||||||||| |||||||  ||  ||||| ||||||| ||||||||  |||| ||||||||| | ||||| || ||||||||||| ||        
gtactcaccttgcagctaaaccaaaa-acattctttgtgctgctccgtgcttgaa-atttctgttttggtttgtttcaatt---agGTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCA--------

upper sequence: GLYMA07G35280.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 3'ss of exon 13
----------------------------------gtacagtattgaaatcaaagcatatttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactt-tcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGTTGAGTC
                                   | |     |  | || |  ||| | ||| ||  ||  || ||     || |  ||||   |||   |   | |   | |||| ||||||||||| |||||||| || |||||||||||||| |||| |||| | |||||||| ||| |||| |||||||| ||||| || ||        
gtaaagtcctgaattatttcaaagtcccaaccttttccgccgatagactcgagtcat-tctaaagaagtctaatttgctgtcattttcttgttccatttcgaaaaatccgataagGTATGGAAGAAAGTTGTATATGCAGACCGACTTCTGCAGCTGTTCAAATACGTTCCTCGTGAGCAGCTGACAATCCCAGACTTTGTTTTCCA--------

upper sequence: GLYMA07G35280.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 12
------------gtacagtattgaaatcaaagcatatttaatgacctc----atatgtgtatgtatatat-ttgtg-------ttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGTTGAGTC
            |||   |  |  |   || |  ||| |  |||||||    |  | ||| || |    | ||||        || ||   |  |    |  |||| ||||||||||||||||||| ||| |||||  ||||||| ||||||||| | || ||||| |||||||| ||||| || |||||||||||        
gtaagtccaaaagtatcctccttgaccaaatgattatatcctgacctctgtgacttctgtttgaaagcttattgtaagtgaaattgttgggaaatggtctctagGTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCA--------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgacctcatatgtgtatgtatatatttgtgttattaaaagttaactttcagGTTTGGAAGAAAGTGGTATATGCTGATCGACTTCTGCAGCTCTTCAGATACATACCTCGTGAACAGTTGACCATCCCAGATTTTGTGTTTCAGTTGAGTC
                                          agttaac  putative branch site (score: 3)
                                                ctttc  CT-rich tract
                  tatgtatatatttgtg  TA-rich tract