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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattttaagctaatatccctgcaagcttagaagtttagcccaatagtgttcatctattctgttgccgactgcagATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTTCAGTGGTTATATTTTTTCCGACCATTCAATGCGGTCCAGAATGCGGGAT

Basic information

species Glycine max
transcript GLYMA07G34600.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207720878|gb|GD701319.1|GD701319
EST:     CTAAATCATAATTCCTTGGTCTACTAATT                         ATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT
genomic: CTAAATCATAATTCCTTGGTCTACTAATTgtaagcattt ... ccgactgcagATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT
EST: gi|19053462|gb|BM732129.1|BM732129
EST:     GCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATT                         ATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT
genomic: GCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATTgtaagcattt ... ccgactgcagATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT
EST: gi|26267806|gb|CA818869.1|CA818869
EST:     GCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATT                         ATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT
genomic: GCTCGGATACCCCAAAAAAGCCTAAATCATAATTCCTTGGTCTACTAATTgtaagcattt ... ccgactgcagATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagcttagaagtttagcccaatagtgttcatctattctgttgccgactgcagATAATTTGCAGCAGAATGCGGGAAAATTGGATTTCCTGGGAAGATGTATTTCAGTGGTTATATTTTTTCCGACCATTCAATGCGGTCCAGAATGCGGGAT
           aagttta  TA-rich tract