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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacagaattgcacacatgttaaaatattgtatacaatcatgtgactgctgcatactcgctaaaccgttctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG

Basic information

species Glycine max
transcript GLYMA07G18470.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18470.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 13
gtaagtacagaattgcacacatgttaa-aatattgtatacaatcatgtgactgctgcatactc-gctaaaccgttctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG
                       | || ||  | |   |   | |   |  ||     ||||| | |  |       | | |  | | |||| |    |  ||  | ||||   || ||      ||||||| |||| ||||| |||||||||||||| |||||||| |||||||||
-----------------------tgaacaacgtagcgga-ggtaacagggttgtctgttactctgtttcattaacactgccacttatgtgtttgtgcatt-ctaatacttaatttcctgga----gcagTTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589810|gb|BI674426.1|BI674426
EST:     TTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAG                         TTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAG
genomic: TTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAAGTCTTTTTTCAGgtaagtacag ... tgccttgcagTTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG
EST: gi|192328988|gb|FK021399.1|FK021399
EST:     TTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAAGTCTTTTTTCAG                         TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG
genomic: TTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAAGTCTTTTTTCAGgtaagtacag ... tgccttgcagTTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctaaatttatgttagcatctcactggttcttatcatcttgtgccttgcagTTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG
      taaatttatgtta  TA-rich tract