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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacctctgcttagtttttttcgcttatttttcatgtatattaatatcttgctggtactaaaaggtttttaatatggaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGTATGGCGTAGCCTGGAAAAGCACTTTCTGGAGTGAGCCATCGGGGATTCC

Basic information

species Glycine max
transcript GLYMA07G18160.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaagt---ttacctctgcttagtttttttcgcttatttttcatg-tatattaatatcttgctggtactaaa---aggtttttaatatggaaatat---cagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGTATGGCGTAGCCTGGAAAAGCACTTTCTGGAGTGAGCCATCG--GGGATTCC
||||||   |||  ||  ||  ||||| |   |   | | |  |  | | | | ||    |       ||||   | | ||||  |  | |  | |   ||||||||||||||||||||||| || ||||| |||||  | ||||| | | |||   |    | |   |    |   | |    |    | ||   |||||   
gtaagtcccttaaatcctctcggttttctgttccattatatagttctgtgtcattagtcagagatctttaaactcatgcttttggtgggtattttttggcagGGATGGAGAAGAAAAAAGCCGAGCGGCAGATTCCAGCTCTCTACCTAATGTAAATCTCTTCTTTTGATTTTATCGTTTATGTTTCCTCGTCTCTGGGATC--

upper sequence: GLYMA07G18160.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 3'ss of exon 13
gtaagtttacctctgcttagtttttttcgcttatttttcatgtatattaatatcttgctggtactaaaaggtttttaatatggaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGTATGGCGTAGCCTGGAAAAGCACTTTCTGGAGTGAGCCATCGGGGATTCC
||||||    ||   ||| ||  || | |  || | |    ||| |           |   | | ||      ||     ||||| | ||||||||||||||||| ||  |||||||||||||||||  |||| |  |||  | |  | | ||| || | |||||   |     ||   | |  |   ||| 
gtaagtgatacttgacttggtacttcttgtgtagtctgatcgtaaag---------accaatgccaattttcattattcttggaactttcagGGATGGAGAAGAAGAAGACCTAGTGGCAGGTTCCAGCTGTCCAGTTGAATTGTATCTTTGCCCGGGAGAGCACACACCCACCTGGAGCTTTTGTAGTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337760|gb|CO981626.1|CO981626
EST:     TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTT                         GGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttac ... gaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
EST: gi|15814514|gb|BI786789.1|BI786789
EST:     TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTT                         GGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttac ... gaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
EST: gi|254348009|gb|GR854258.1|GR854258
EST:     TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTT                         GGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttac ... gaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
EST: gi|51335080|gb|CO978946.1|CO978946
EST:     TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTT                         GGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttac ... gaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
EST: gi|15815115|gb|BI787390.1|BI787390
EST:     TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTT                         GGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT
genomic: TTGCATTTGTTGTTTTGGCTGGATTGACCTTTGTGTATTACGCTGCCTTTgtaagtttac ... gaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtatattaatatcttgctggtactaaaaggtttttaatatggaaatatcagGGATGGAGAAGAAAAAAGCCTAGTGGCAGGTTCCAATTGTCTACATGAGGTATGGCGTAGCCTGGAAAAGCACTTTCTGGAGTGAGCCATCGGGGATTCC
                                  tttttaatatggaaat  TA-rich tract