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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggatttcacttgtaatatctcattggtgactctgaatattgatgcttctgaaagttatttaatattattattaatctaattgcagTATGGACAACTTGGTCATCCTAGGCAAGTTTTATACGTGCCAAGTTACCTCCCT

Basic information

species Glycine max
transcript GLYMA07G04060.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524614|gb|BU083425.1|BU083425
EST:     AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG                         TATGGACAACTTGGTCATCCTAGGCAAGTTTTATACGTGCCAAGTTACCTC
genomic: AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAGgtgggatttc ... ctaattgcagTATGGACAACTTGGTCATCCTAGGCAAGTTTTATACGTGCCAAGTTACCTC
EST: gi|6964211|gb|AW432904.1|AW432904
EST:     AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAC                         TATGGACAACTTGGTCATCCTATGCAAGTTTTATACGTGCCAAGTTACCTC
genomic: AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAGgtgggatttc ... ctaattgcagTATGGACAACTTGGTCATCCTAGGCAAGTTTTATACGTGCCAAGTTACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaatattgatgcttctgaaagttatttaatattattattaatctaattgcagTATGGACAACTTGGTCATCCTAGGCAAGTTTTATACGTGCCAAGTTACCTCCCT
               ttctgaaagttattta  TA-rich tract