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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatgcttttatctacctcccttgttttcacttgcttttgtgccttcgtcattgctataaatgctctttaattcatttcggacttttataaaatattacattgttgacaacttactccctccatggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA

Basic information

species Glycine max
transcript GLYMA07G01550.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01550.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 13
gtataaatgcttttatctacctcccttgttttcacttgcttttgtgccttcgt-cattgctataaatgctctttaattcatttcggacttttataaaatattacattgttgacaacttactccctccatggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA
                           ||    | ||  ||| ||||   | | ||   |  |  |   |  ||  |  || ||  |  |  || |||| | |  || |   |||   | |       ||  ||||||||  | |  || |||||  |||||||  |||||||||| |  || |||| | |||| ||||||||||| ||||||||| | ||||| ||||||||||
---------------------------gtaaataattcttttagtgctcccttacaccacagtgcagagttgttt-tgaatgtcaaaagtacatgaaatctgaagttttgtccaaacaagt-------tgtgcagAACAATGTAACAGAAATCAGAGCAGATGCGCTGAAGCTGCTTGCCATGTTGAAGAGGCCAGTTCCTCGTGCTGCTGCAACAATTGGAGCTTGGCTTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188834|gb|HO035527.1|HO035527
EST:     TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTG                         AACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTG
genomic: TTTTGATGTTTGCTTGCGCATTCCCACCTGCATTTGCTTTTGCTGCTGTGgtataaatgc ... ccatggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTG
EST: gi|21675839|gb|BQ628190.1|BQ628190
EST:     ATTTGCTTTTGCTGCTGTG                         AACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTG
genomic: ATTTGCTTTTGCTGCTGTGgtataaatgc ... ccatggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcggacttttataaaatattacattgttgacaacttactccctccatggtcagAACAACCTTATGGAGATCAGGACAGATGCATTGAAGCTGCTAGTGATTTTGAGGCGGCCTGTTCCTCGTGCCGCTGCAACAGTAGGAGCCTGGCTTAACA
                                 aacttac  putative branch site (score: 2)
                                   cttactccctccat  CT-rich tract
        ttttataaaatattac  TA-rich tract