1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagatgaattattatgatgccgtgatgattaaaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTEST: gi|193715735|gb|FK648982.1|FK648982
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGT
EST: ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGEST: gi|120494823|gb|EH222990.1|EH222990
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAG
EST: GAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|51343333|gb|CO984066.1|CO984066
genomic: GAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|6666498|gb|AW277892.1|AW277892
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193427222|gb|FK394802.1|FK394802
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: AAATTCTTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAAACTTCCTAACTTTTGEST: gi|193518433|gb|FK476690.1|FK476690
genomic: AAATTC-TTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCAT-AACTTCCTAACTTTTG
EST: ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193388561|gb|FK356680.1|FK356680
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193358337|gb|FK324949.1|FK324949
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193515357|gb|FK474697.1|FK474697
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|5761267|gb|AI966630.1|AI966630
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193458393|gb|FK424154.1|FK424154
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: AGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|120494951|gb|EH223118.1|EH223118
genomic: AGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGEST: gi|193670813|gb|FK612795.1|FK612795
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
aaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG
ttttaac putative branch site (score: 2)
tatgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgaattattatgatgccgtgatgattaaaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG