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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatgaattattatgatgccgtgatgattaaaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG

Basic information

species Glycine max
transcript GLYMA06G20360.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193510165|gb|FK467559.1|FK467559
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGT
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGT
EST: gi|193715735|gb|FK648982.1|FK648982
EST:     ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAG
EST: gi|120494823|gb|EH222990.1|EH222990
EST:     GAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: GAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|51343333|gb|CO984066.1|CO984066
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|6666498|gb|AW277892.1|AW277892
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193427222|gb|FK394802.1|FK394802
EST:     AAATTCTTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAAACTTCCTAACTTTTG
genomic: AAATTC-TTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCAT-AACTTCCTAACTTTTG
EST: gi|193518433|gb|FK476690.1|FK476690
EST:     ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193388561|gb|FK356680.1|FK356680
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193358337|gb|FK324949.1|FK324949
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193515357|gb|FK474697.1|FK474697
EST:     ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|5761267|gb|AI966630.1|AI966630
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193458393|gb|FK424154.1|FK424154
EST:     AGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: AGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|120494951|gb|EH223118.1|EH223118
EST:     ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
EST: gi|193670813|gb|FK612795.1|FK612795
EST:     ATGCAATATCTGCAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAAT                         CATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG
genomic: ATGCAATATCTACAGAACGTCGTGAGGCAGTGAAGAAATTCTTTAAGAATgtgagatgaa ... attttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG
                             ttttaac  putative branch site (score: 2)
 tatgtttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagatgaattattatgatgccgtgatgattaaaaatatttccatgactaaaacagtatgtttttaacccctgaaatattttgacagCATTTAGATGTAGTGCCAAAAGAGGAGAACCATAACTTCCTAACTTTTGTGATTCCTCATGACAGAGAGGCGCTCATGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG