1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtagctctatgcaattgatacacttgcaatcttatgctcctgtttcattatcttggactcttttttttccaacttgtcatgcttgcgattttcatctctccccgaggggtgcaatacctaatcagtttatgttgtttttaacttaaatctctcttatgatcagAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGCTGGGCTCCTATTTTTATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTA
species | Glycine max |
transcript | GLYMA06G10180.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAG AATGCTATTCCCTTEST: gi|23729064|gb|BU762615.1|BU762615
genomic: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtagctctat ... ttatgatcagAATGCTATTCCCTT
EST: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAG AATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGCTGGGCTCCTATTTTTEST: gi|17400562|gb|BM177344.1|BM177344
genomic: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtagctctat ... ttatgatcagAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGCTGGGCTCCTATTTTT
EST: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAG AATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGC
genomic: CAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGgtagctctat ... ttatgatcagAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGC
gtgcaatacctaatcagtttatgttgtttttaacttaaatctctcttatgatcagAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGCTGGGCTCCTATTTTTATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTA
ttttaac putative branch site (score: 2)
tctctcttat putative PPT
tttatgttgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctctatgcaattgatacacttgcaatcttatgctcctgtttcattatcttggactcttttttttccaacttgtcatgcttgcgattttcatctctccccgaggggtgcaatacctaatcagtttatgttgtttttaacttaaatctctcttatgatcagAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTAGCTGGGCTCCTATTTTTATTAGGCCATCAAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT