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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC

Basic information

species Glycine max
transcript GLYMA06G09190.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttg-agtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                  || ||     |   ||   | |   |    ||| ||| |  ||  || | |   |  |||| | | | |      |  |    |   | || ||  | | | ||| || |  ||    ||||||||||| ||||| |||||||||||||| || || ||||| |||||||| ||||  || || || |||||||||||  ||||
--------------------------------------------------gagaagccattcacagcgcaaacacttgggtgtcttg-taatgtttactgttggtatttat-tatgagcaagaagccaagaactgacttgaatg--cttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttact-tgtatttggattgatccttt-tagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                      ||| | | | || || |||   |  |  | |||    | |||  ||  |  ||| |  ||| |||  | | |   | |  |||   | ||||  |    ||| || || ||    || |||||||| ||||| || || |||||||| || |||||||| ||||| || ||||  || || || |||||||||||||||||
------------------------------------------------------attagttggtgtgtacatggaaagtttgtgtgcacagg-atacgttcccctgttgttattacactagcatgtccttatagattgtaactgattttgagcagGGACGCAATATGCCCAACAATCCTACAAAGTAAGCGACTCATTTCCCTTCAAGTGGATAAACAAGAAGTGGAAGGAGGGTTTCTATGTCACTGCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G116151_T03 (Zea mays), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatg--atcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                         |      |||||     ||||     | || |   | |||  || || | |||||  | | ||           || |||||      | | | |||    |||  |  |  ||| || || ||    |||||||| || ||||| || || ||||| || || |||||||| |||||||||||||  || || |||||||| |||||||||||
----------------------------------------gtcaagctgcgattgcaagcttttagctggaggctgtgacagtttatggtattgcacttgtaga-----------tacactgtag----aatggaattgactttgtcctctccagGAACACAATATGCCCAGCAATCTTACAAAGTAAGCGACTCATTCCCTTTCAAGTGGATAAACAAAAAATGGAAGGAGGGTTTTTATGTTACTGCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G045259_T02 (Zea mays), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                               |   || |    ||  |     |   ||| ||      |  |||   | |    ||| |   |   |||||    |  | |||    |||    || ||  |  ||| || || ||    ||||| ||||| ||||| |||||| ||||||| || || ||||| |||||||| ||||  || || || |||||||||||||||||
----------------------------------------------ggaaaatgagctactcaatccccgggaatcccagagg--ggatttaagtttccaaactagccctaaataaacaag-taatgactctggtttt--ctgttc--tccagGAACACAATATGCCCAGCAGTCCTACAAAGTAAGTGATACATTTCCTTTCAAATGGATAAACAAAAAGTGGAAGGAGGGCTTCTATGTCACTGCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G158177_T01 (Zea mays), 3'ss of exon 6
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                || ||  | |  | || | | | | ||  ||        |||  |  ||||   | || | ||||    | |    | ||    ||||  |   |  |                  |  ||| || || ||    ||||| ||||| ||||| || ||| ||||||| || || ||||| |||||||| ||||  || || || |||||||||||||||||
--------------------------------ttttggttctatgctgtccaaagtgggagtggtaacccttgaatatttgttgc-cattggtatat---aaataaacaagtaatgactggttctctgttc-----------------tccagGAACACAATATGCCCAGCAGTCCTACAAAGTAAGCGATACATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGCTTCTATGTCACTGCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgtt-ttgcttttgcatatt--ttgactggttatgtttaaactgtcttcttacttgtatttggattgatcct-tttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                                       |  ||   | ||  | |||||| ||     |  |   ||||| |      | |||   |       |||  ||   |  | || ||| |||||||| || || |||||||| |||||||||||||| ||||| || |||||||| || ||||| ||||| ||||| |||||||| ||  | |||||
----------------------------------------------------------------------gtattcttgttttactccttttgaatgcaggtgtaacagttatttccgttttatctctgtttcacagttttcatcatttgtattcagGGACCCAGTATTTACAACAATCCTACAAAGTCAGTGATTCTTTTCCCTTCAAGTGGATAAATAAAAAGTGGAGGGAAGGGTTTTATGTTACATCAATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattt-tgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                                  ||||   |  |||| ||| |||  || || | | ||||    | | | || |   | | |||   |  ||||  |||||    |  |||||| || |||||||| || || || ||||| |||||||||||||| || |||||||| || ||||||||||| || || || ||||||||  |||||||
-----------------------------------------------------------------gttagtcta--acatatttggctgatggatttctatgacaaaatttatctatat--tttgcttgacttcatttc-attgac---tccagGTACACAATACTTGCAACAGTCTTACAAAGTTAGTGATTCATTTCCCTTCAAGTGGATAAATAAAAAATGGAGGGAGGGTTTCTATGTCACCTCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 13
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattg-atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                |  ||| |    || | |||   | ||    | |||   ||||     |||||| |  ||    | || ||   || |  ||  | |   ||||   |  |   ||| ||    ||    ||||| || || ||||| ||||| || |||||||||||||||||||| || |||||| ||||||| || || || ||  |||||||
-----------------------------------------------cgtcatagtcctttttaattttagttat----tttttaattttta---gttttgagttattcgtatgaatcttcgttgtagctcatctcccgattttgtgttaacagGAACATCATATACACAGCAGTCATACAAAGTGAGTGACTCTTTTCCATTTAAGTGGATCAATAAGAAATGGCGAGAAGGCTTCTACGTTACATCTATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 3'ss of exon 13
-----------gtta--atcccctgaagtatttattcttcatgtattgtgtct-ttgggatggcgataattggcttgagtttagatgatcacatgttttg-cttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
           | ||  ||||  ||| |||| |    |  || |   | ||   |    | || | |   ||  ||    ||| |   |  ||| |   | | |||   |  |||    | |  ||||| |  |||    | |  | |    |  || ||   | |||| ||   ||||  |||||| || || ||||| || || || |||||||||||||||||||| || |||||| ||||||| ||||| || ||| | |||||
gtattttattggatagtatcctttgatgtatattgaatctattttcagagttgatctcaagggtgtttgatgatttattcttataatttgtcatttggagacctttttgtggttttctggctcttgttttacttgttgcatgatgtctcacggtgtttatttctgtagGAACGTCGTACACGCAGCAGTCTTACAAAGTGAGCGACTCTTTTCCATTTAAGTGGATCAATAAGAAATGGCGAGAAGGCTTTTACGTGACTTCAATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: EFJ38433 (Selaginella moellendorffii), 3'ss of exon 11
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                                                    |  | | || | || |   |||  |   |   | ||||  || ||  || |||        ||    ||| || |  |||  ||| ||||| || ||||| || ||||||||||| || ||||||||||||||||| ||||| ||||| ||||| || ||| | |||||
-----------------------------------------------------------------------------------gtattgtcgc-tgttattgatggccac--tggcattgtcg-ctgacgcgtgttt-------cccccgcagGGACACCATACACGCAACAATCGTACAAAGTGAGCGATTCATTTCCGTTCAAGTGGATCAACAAAAAGTGGAGGGAAGGGTTTTACGTGACTTCCATGGC

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 13
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 11
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaa-actgtc-ttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                                                                              |||| |  ||| |  || |    |||| | || || ||      ||  |    ||    ||| || |  |||  ||| ||||| || ||||| || ||||||||||| || ||||||||||||||||| ||||| ||||| ||||| || ||| | |||||
---------------------------------------------------------------------------------------------gtattgtcgctgttattgatggccactggcattgttgctgacgcgtgattc---ccccgcagGGACACCATACACGCAACAATCGTACAAAGTGAGCGATTCATTTCCGTTCAAGTGGATCAACAAAAAGTGGAGGGAAGGGTTTTACGTGACTTCCATGGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193334483|gb|FK301731.1|FK301731
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208195596|gb|GD989929.1|GD989929
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTACAGC
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGC
EST: gi|193532847|gb|FK493269.1|FK493269
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208322512|gb|GE121741.1|GE121741
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207745915|gb|GD718719.1|GD718719
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|15337521|gb|BI498177.1|BI498177
EST:     TGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: TGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193323301|gb|FK292533.1|FK292533
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193493200|gb|FK463030.1|FK463030
EST:     GCCGGGGCTAATAATTGGTATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAA-TGG-ATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193349477|gb|FK318595.1|FK318595
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193401851|gb|FK369310.1|FK369310
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193320898|gb|FK287679.1|FK287679
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207687344|gb|GD669346.1|GD669346
EST:     CCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: CCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207790752|gb|GD761889.1|GD761889
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208125259|gb|GD921031.1|GD921031
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208149484|gb|GD948930.1|GD948930
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208277948|gb|GE075347.1|GE075347
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207728834|gb|GD708256.1|GD708256
EST:     GGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193390169|gb|FK356873.1|FK356873
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCTAGTCAATCCTATAAAGTCAGTGATTCATTTCCATT
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGC-AG-CAATCCTATAAAGTCAGTGATTCATTTCCATT
EST: gi|193377059|gb|FK342696.1|FK342696
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208044757|gb|GD841909.1|GD841909
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|51343674|gb|CO984407.1|CO984407
EST:     TGCCATAGCNNNGNCTAATAATGGATNNNCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: TGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208152046|gb|GD950019.1|GD950019
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193442804|gb|FK408788.1|FK408788
EST:     GGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193445039|gb|FK405367.1|FK405367
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193426281|gb|FK389056.1|FK389056
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAGAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGG-TTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208091185|gb|GD890938.1|GD890938
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193728992|gb|FK665646.1|FK665646
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193717757|gb|FK652959.1|FK652959
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208222336|gb|GE020774.1|GE020774
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207837070|gb|GD808379.1|GD808379
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193527137|gb|FK484593.1|FK484593
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193526486|gb|FK483788.1|FK483788
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACCTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207702142|gb|GD682015.1|GD682015
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193647519|gb|FK589652.1|FK589652
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207790564|gb|GD760917.1|GD760917
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|207845921|gb|GD820250.1|GD820250
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208120226|gb|GD919321.1|GD919321
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193406327|gb|FK373522.1|FK373522
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193359213|gb|FK326272.1|FK326272
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193308436|gb|FK277371.1|FK277371
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208177741|gb|GD974866.1|GD974866
EST:     GCCGGGGCTAGTAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193365817|gb|FK333262.1|FK333262
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAAGTCAGTGATTCATTTCCATTT
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTAT-AAAGTCAGTGATTCATTTCCATTT
EST: gi|193376185|gb|FK342564.1|FK342564
EST:     GCTAATAATGGATCCCCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193515753|gb|FK473343.1|FK473343
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208060662|gb|GD856640.1|GD856640
EST:     GCCGGGACTAATAATGGATCCTCATTGGCTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTT
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCA-TTT
EST: gi|193589444|gb|FK544160.1|FK544160
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|208168174|gb|GD966498.1|GD966498
EST:     GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGCCAGTGATTCATTTCCATTTA
genomic: GCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
EST: gi|193462719|gb|FK428184.1|FK428184
EST:     GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG                         GTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA
genomic: GCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGgttaatcccc ... atccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC
                                              tcctttt  CT-rich tract
        ttatgtttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaatcccctgaagtatttattcttcatgtattgtgtctttgggatggcgataattggcttgagtttagatgatcacatgttttgcttttgcatattttgactggttatgtttaaactgtcttcttacttgtatttggattgatccttttagGTACCCAGTACTTGCAGCAATCCTATAAAGTCAGTGATTCATTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTCACTGCTATGGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA