Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtggtagcattagtgttaataattgatagtaatattttatgttgtactctctttgttcagcctgaaataagcagtgaacctaaattgaaaaacaaaatcaagaaaattatttttccttttattcggtttagattggaataatatggccttttcctcctgattgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTC

Basic information

species Glycine max
transcript GLYMA06G07580.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07580.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 3'ss of exon 4
gttggtggtagcattagtgttaataattgatagtaatattttatgttgtactctctttgttcagcctgaaataagcagtgaacctaaattgaaaaacaaaatcaagaaaattatttttcctttta-ttcggtttagattggaataatatggccttttcctcctgattgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTC
             | ||||  || |   |||   | |||  ||| || |    |    ||  |   ||||   |||| | ||| |    ||||     |  |  |     | ||  |      || || || | | |   ||||||  ||  ||  |  || | || |||||  | | ||||  || || ||||| |||||  || ||||   |||| |||| |||||||| ||||||   || || |||||||||||||||||||| |||||||  ||||
------------gtaagtgccaagag--gattaaagtatcctatattat----taaaagtgaatgttgaa--gagcactaaacatgtgatgaagggggagctgtaatgcttcatcatgttgcatagttaggatcatagaagaataac-tgaactacttttcttaatggttttaaatg-cagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTC

upper sequence: GLYMA06G07580.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
gttggtggtagcattagtgttaataattgatagtaatattttatgttgtactctctttgttcagcctgaaataagcagtgaacctaaattgaaaaacaaaatcaagaaaattatttttcctttta-ttcggtttagattggaataatatggccttttcctcctgattgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTC
             | ||||  || |   |||   | |||  ||| || |    |    ||  |   ||||   |||| | ||| |    ||||     |  ||||     | ||  |      || || || | | |   ||||||  ||  ||  |  || | || || ||  | | ||||  || || ||||| |||||  || ||||   |||| |||| |||||||| ||||||   || || |||||||||||||||||||| |||||||| ||||
------------gtaagtgccaagag--gattaaagtatcctatattat----taaaagtgaatgttgaa--gagcactaaacatgtgatgaagggggagctcaaatgcttcatcgtgttgcatagttaggatcatagaagaataac-tgaactagttttcttaatggtcttaaatg-cagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208255614|gb|GE055255.1|GE055255
EST:     ATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAG                         GTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAG
genomic: ATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGgttggtggta ... tgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcggtttagattggaataatatggccttttcctcctgattgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTC
                                 tcctgat  putative branch site (score: 3)
                         ccttttcctcctgatt  CT-rich tract
               aataatat  TA-rich tract