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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatatgctagtagttttgaatctgtatcttttaagtttgattttgccttaaagtgtgtgcattaagtcataaatttaagactcattggataaaatatgcaatgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208314541|gb|GE113877.1|GE113877
EST:     AGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATT                         GTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGTACTTGGAAA
genomic: AGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTgtaagtatat ... atgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
EST: gi|207823198|gb|GD794923.1|GD794923
EST:     ACCTACACAGAAAAATT                         GTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
genomic: ACCTACACAGAAAAATTgtaagtatat ... atgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
EST: gi|208062441|gb|GD860519.1|GD860519
EST:     GTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAAATT                         GTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAA
genomic: GTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAG-AAAAATTgtaagtatat ... atgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAA
EST: gi|207746621|gb|GD721608.1|GD721608
EST:     CCTCCTATCTTGGGTAAATTTGACCTACACAGAAAAATT                         GTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
genomic: CCTCCTATCTTGGG-AAATTTGACCTACACAGAAAAATTgtaagtatat ... atgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
EST: gi|193652004|gb|FK597274.1|FK597274
EST:     AGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATT                         GTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA
genomic: AGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTgtaagtatat ... atgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcattaagtcataaatttaagactcattggataaaatatgcaatgtttgaagGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTT
     attaagtcataaattt  TA-rich tract