Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggcaagtctatcttttgaataaagttaaaaccttgactcaatgtatcaaattttttatatttctgtttcctgtgttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAGGATGTCTCAAAGTGCAGTTGTTCTTAATGAATGTTAACCTTGCACATG

Basic information

species Glycine max
transcript GLYMA06G01260.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723880|gb|BW675226.1|BW675226
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|214005189|gb|DB985493.1|DB985493
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193384250|gb|FK349304.1|FK349304
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAA-GAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|208255826|gb|GE052805.1|GE052805
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|209697051|gb|BW667041.1|BW667041
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|207786644|gb|GD757917.1|GD757917
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193443534|gb|FK404674.1|FK404674
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAA-GAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: gi|208130170|gb|GD926725.1|GD926725
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193618453|gb|FK572563.1|FK572563
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|57575650|gb|CX548625.1|CX548625
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|207688414|gb|GD672641.1|GD672641
EST:     CAAGAAGAAGCCAAGTTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
genomic: CAAGAAGAAGCCAAG-TTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: gi|193327758|gb|FK296383.1|FK296383
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193431457|gb|FK396083.1|FK396083
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGACATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|254335757|gb|GR847285.1|GR847285
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193472879|gb|FK438316.1|FK438316
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTCGCGG                         AAAAAGAAGCTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193339589|gb|FK304866.1|FK304866
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|208282493|gb|GE074249.1|GE074249
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|254335758|gb|GR847286.1|GR847286
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193679873|gb|FK621945.1|FK621945
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: gi|193343864|gb|FK311540.1|FK311540
EST:     TTGACAGACAAGAAGAAGCCAAGTTGCGG                         -AAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: TTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193391557|gb|FK354146.1|FK354146
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAA-GATGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|193440534|gb|FK405491.1|FK405491
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAG
EST: gi|208239470|gb|GE041342.1|GE041342
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
EST: gi|208209242|gb|GE005122.1|GE005122
EST:     AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGG                         AAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA
genomic: AAGAAGAGCTGCTTGCTTACATTGACAGACAAGAAGAAGCCAAGTTGCGGgtaagttggc ... ttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttgactcaatgtatcaaattttttatatttctgtttcctgtgttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAGGATGTCTCAAAGTGCAGTTGTTCTTAATGAATGTTAACCTTGCACATG
 ccttgac  putative branch site (score: 4)
          aatgtatcaaattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttggcaagtctatcttttgaataaagttaaaaccttgactcaatgtatcaaattttttatatttctgtttcctgtgttttaatcagAAAAAGAAGTTTTGCTGGTGAGATTCATTACTGGGAAAGAGATTGTGCAGAGGATGTCTCAAAGTGCAGTTGTTCTTAATGAATGTTAACCTTGCACATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG