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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattccaaaactttatcagtttaaagtttgggcatttatcattacttatactaaaggaagcaatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT

Basic information

species Glycine max
transcript GLYMA05G38550.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G093670_T01 (Zea mays), 3'ss of exon 4
-----------gtacgtattccaa--aactttatcagtttaaagtttgggcatttatcattacttatactaa--aggaagcaatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
           ||   |  | ||     | ||||   ||   |  ||  |  || |  | | | |  ||  |   |  |   ||||||||||| | |||||| ||||||||||||||||| |||||||||| ||| || |||||| | ||  |||     ||  | |  | |  |             
gtacaccacatgtttatggtgcagtctgccttattgattctga--ttaagatttcaatactccatgaacacatctgctatttatgcagGCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAG-------------

upper sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM5G872204_T02 (Zea mays), 3'ss of exon 13
gtacgtattccaaaactttatcagtttaaagtttgggcatttatcattactt--atactaaaggaag-----------caatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
    ||||  || || |||||    |   |  |||   ||  ||||  ||||  |||||  | |||              || |||||||| | |||||| ||||||||||| ||||| |||||||||| ||| || |||||||| ||| ||||    ||  | |  | |  |             
----gtatagcacaagtttatggtctgtcatattgaatatg-atcaagacttccatacttcatgaacatatctgctatttatacagGCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAG-------------

upper sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G059225_T02 (Zea mays), 3'ss of exon 13
-----------------------------------------------gtacgtattccaaaactttatcagtt--taaagtttgggcatttatcattactta-tact----aaaggaagcaatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
                                                 | ||  |   || || | ||| |    | | ||  |  ||| ||   |   || |  |    |  ||||    |||||||||| | |||| ||||||||||||||||||| ||||| || |  || || ||||| || ||  ||||   |||| | |  | || |             
gtatgaagcttaaatgcatatgttgatatctgtttctttatacaggatgatgttatatgaagctgt-tcaatagacatacttgtgatattgatttctgtctagtgatgtgcattggaaattgtgcagGCAGAGAGTGCAATGGATCAGATGGATTGGATTGAAAAAATTACCGGCGTCATTGCTTCTTTGCTGAGCTCCCAGTCTCCTG-AACGA------------

upper sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G61980.1 (Arabidopsis thaliana), 3'ss of exon 13
---------------------------------------------gtacgtattccaaaactttatcagtttaaagtttgggcatttatcattacttat--actaaag------gaagc-----aatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
                                              |   | ||  |  | || || |   |   || |   | |  |||||  |  |   || | |        || |      ||| ||||||| ||||||  |||||||||||| ||||| ||||| |||| |||||||||||| || || |||||| |||| ||||  | ||  | |  |  |    
gtatgtttccaagtgaaaagatcttcattttcttcaacatattgaatttttcttttagga-ttcatgatactttggtgttctcttccatcatccccgaatgaccagaattttttaaatcttattgatgtagGCAGAGAATGCACAGGATCAGATGGACTGGATCGAAAAAATAACTGGAGTAATTGCTTCTTTGTTGAGTTTCCAAACACCTGAAAGAGCA-ATCATG---

upper sequence: GLYMA05G38550.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 3'ss of exon 13
---------------------------------------------------------------------------------------------------------gtacgtattccaaaactt-tatcagtttaaagtttgggcatttatcattacttatactaaaggaagcaatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
                                                                                                         ||||  || |      || | |||||    ||    |    |    | |  ||||| |||     | |||||||||||| |||||| ||||||| ||||| ||| | |||||||||| ||||||||| || || || ||||||  | |  |||| | || |             
gtacaaaatcaaaggttagatcaaaaatataaatttgggttttcattcatgtttttagactatacttatatgaagctcagcattatcagcccaaatacttgtccagtactaatgctggggattatgtcagtacctagagcagattctctcaact--ttatattaacacttg-aatgcagGCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGG-------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagtttaaagtttgggcatttatcattacttatactaaaggaagcaatgcagGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGGTACGTAGTAGAT
                                   tactaaa  putative branch site (score: 1)
                    atttatcattacttat  TA-rich tract