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...atccttgaaataggctgaacgcttatatatttagtatcatagaagacattttactattttagcactttcaacatgaattatgcattgtaatttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATG
species | Glycine max |
transcript | GLYMA05G34820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAG GCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCAEST: gi|58021999|gb|CX708740.1|CX708740
genomic: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAGgtgtgtggac ... tttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCA
EST: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAG GCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCAEST: gi|209696720|gb|BW666962.1|BW666962
genomic: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAGgtgtgtggac ... tttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCA
EST: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAG GCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCA
genomic: GTGATATACAACAAAAGGTTTTAGAGATTGTTGGCATCTCAATGGAGCAGgtgtgtggac ... tttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCA
acattttactattttagcactttcaacatgaattatgcattgtaatttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATG
tttctttc CT-rich tract
attgtaatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccttgaaataggctgaacgcttatatatttagtatcatagaagacattttactattttagcactttcaacatgaattatgcattgtaatttctttcagGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- ccttgaa
- - - - - - - -tgaacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat