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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagatatttgcttctactagctttttcataacatttcaatttgctccatacagtctaatataaagcacttcgtatttcagGCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCAAAATCTTGTACAGCCACTAGACAGAAAACTAGTGCTTTGTCTATGCGCT

Basic information

species Glycine max
transcript GLYMA05G32930.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192312688|gb|FK004376.1|FK004376
EST:     ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG                         GCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAGgtgaagatat ... cgtatttcagGCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA
EST: gi|192306261|gb|FG996861.1|FG996861
EST:     ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG                         GCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAGgtgaagatat ... cgtatttcagGCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA
EST: gi|192312689|gb|FK004377.1|FK004377
EST:     ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAG                         GCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCCGTCAGCTATGCTACATCTGCAGGAATGAAGgtgaagatat ... cgtatttcagGCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataacatttcaatttgctccatacagtctaatataaagcacttcgtatttcagGCTTTGAAGTTGCATTTGGATTTTGGGAGTTCAACGAAAGCAACAACTCCAAAATCTTGTACAGCCACTAGACAGAAAACTAGTGCTTTGTCTATGCGCT
                            tctaatataaa  TA-rich tract