1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGT
species | Glycine max |
transcript | GLYMA05G32070.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAGTGTNNNGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|193313221|gb|FK279176.1|FK279176
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|192296534|gb|FG991640.1|FG991640
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|58018661|gb|CX705403.1|CX705403
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|58024594|gb|CX711335.1|CX711335
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|192293903|gb|FG986112.1|FG986112
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATEST: gi|51335204|gb|CO979070.1|CO979070
genomic: GAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
EST: ACAGCCGCAGAGTTCTAAG TGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
genomic: ACAGCCGCAGAGTTCTAAGgtttattgcc ... tgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAAT
attatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGT
tgttaac putative branch site (score: 2)
tttgtctttc putative PPT
ttttgatatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG