Sequence
atgc intronic sequence ATGC exonic sequence...cagtcaacacttgatcattaatttgtgatctcttgagtccctaataaagagcaaaagtgagctactcttattattgcatattttatgcatccattttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC
Basic information
species | Glycine max |
transcript | GLYMA05G26240.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G26240.2 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os08g10600.2 (Oryza sativa), 3'ss of exon 14
cagtcaacacttgat-cattaatttgtgatctcttgagtccctaataaagagcaaa-agtgagctactcttattattgcatattttatgcatccattttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC
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-gtttgacttcaaattcactattactagttctatttaattactgaaagcaaacatttattggaaagatctcattg--gtattgttggcacctaatgtttcagATTTTGAGGGAGGAGGAATTTGCACCAGTAAAGAATGCTAATGGTGCAACTTATGATACTCCTGATAGTGCCAGATTAATGCTGCTCCGCCTTCACAGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19938086|gb|BQ081553.1|BQ081553EST: AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAG GTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
genomic: AGTTTATATTTGATGCATTTCCATATGCTCCTACAACTGCACTTTTTGAGgtgaatataa ... ccattttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagagcaaaagtgagctactcttattattgcatattttatgcatccattttcagGTGTTACGGGAGGAGGAATTTGCACCAGTGAAAAATGCAAATGGATCCAATGTTGACACTCCAGACAGTGCGAAACTACTTGTTCTTCGACTCCATACTC
tccattttc CT-rich tract
tcttattattgcatat TA-rich tract