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gtatgtgttctttaccctaattattgaaattctatgttgattggttttggattattttgttttttatttggtgactgctatctttttttcttttttttttcttttctgaattttccccatttttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGGTTAAG
species | Glycine max |
transcript | GLYMA05G25780.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|207767664|gb|GD739740.1|GD739740
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|207740974|gb|GD714352.1|GD714352
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTTEST: gi|208104675|gb|GD905044.1|GD905044
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTT-
EST: TTGAGAAATTTCAGTCAGCGGTTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|193464012|gb|FK427880.1|FK427880
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|208267765|gb|GE071182.1|GE071182
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|208336761|gb|GE135151.1|GE135151
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGEST: gi|16996654|gb|BM086026.1|BM086026
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
EST: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGC GTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
genomic: TTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTAACCCTCTTTGCgtatgtgttc ... tttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTG
gctatctttttttcttttttttttcttttctgaattttccccatttttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGGTTAAG
ttttttcttttttttt CT-rich tract
tttttttctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttctttaccctaattattgaaattctatgttgattggttttggattattttgttttttatttggtgactgctatctttttttcttttttttttcttttctgaattttccccatttttgtatcagGTGGCTTGGCAAGATTACTTTGGAGACATACATTTCCCAGTTTCATATTTGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA