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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaaattgttgattttgcaaaataatatcttctctaatgatgggtattatcagAAACCTGAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA

Basic information

species Glycine max
transcript GLYMA05G25210.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25210.1 (Glycine max), 3'ss of exon 13
lower sequence: AT4G15570.1 (Arabidopsis thaliana), 3'ss of exon 10
-------------------------------------gttaaaattgttgattttgcaaaataatatc-----ttctctaatgatgggt--attatcagAAACCTGAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
                                        | | || ||  ||||   | ||| || |     || ||| ||  |   |  ||  ||||||||| || |   | | | | | ||| |||||  |  || | || || || || || |||||||||||||| |||||||||||||||||| || || | |
gtaagtcggaagattttattctgagacaaatggtaaccccacatttatttcttttatcatatagtaaccccacttttctgattctcttttgatgttcagAAACCGGAGGTGGTTAATGCGAGTCGGAAGTACAGATTACGTGTACTTGTCTGTGCTCCATCAAACTCTGCACTTGATGAGATTGTGTTGCGGCTTCTGA

upper sequence: GLYMA05G25210.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0015g00460.t01 (Vitis vinifera), 3'ss of exon 9
------gttaaaattgttgattt----tgcaaaat---aatatcttctctaat-gatgggtattatcagAAACCTGAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
       | |   ||| |  |||    |||  | |   |  |||||||    | |||  || ||  |||||||| |||    | ||||| | |||||| ||||||||| | || || ||||| || |||||||| ||||| |||||||||||||||||| |  || | |
gtaagtctgaggcttgctattttatagtgctcatttggaggatcttctgacttagatatgttttg-cagAAACCAGAAATAGTTACTTCCAGTCGTAAATATCGTGTACGGGTACTGGTATGTGCTCCATCAAATTCTGCGCTTGATGAGATTGTGTTGCGCCTTCTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaaattgttgattttgcaaaataatatcttctctaatgatgggtattatcagAAACCTGAAGCTCTAACTTCAAATCGTAAGTATCGTGTAAGAGTGCTAGTATGCGCCCCATCAAACTCTGCCCTTGATGAGATTGTGTTGAGGGTTTTCA
                                 ctctaat  putative branch site (score: 3)
             attttgcaaaataata  TA-rich tract