Sequence
atgc intronic sequence ATGC exonic sequence...aatgtttctgttcttatttgtgattttggagcatttaaaatactttattatttttgttattcaactgtcatggtgtaattatacctctatctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCG
Basic information
species | Glycine max |
transcript | GLYMA05G24520.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G24520.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 3'ss of exon 8
-aatgtttctgttcttatttgt---gattttggagcatttaaaatactttattatttttgttattcaactgtcatggtgtaattatacctctatctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCG
|| ||| || ||||| | | |||| || | |||| ||| | | | || ||| |||| | | | ||| ||||||| |||||||||||||| ||||| |||| | || |||| |||||| ||||||||||||| ||||| || || |||||||| ||||||| | || |
tcat-ttttcatttttattcatttaggtttttga-taattaagataagatttgctacactttgaacaataac--tggtctcacacaccaaatattcacttacagGTTGGAATTCCAATTGCTGCTGGGATGTTGCTGCCTATAACTGGGACCATGCTGACTCCATCTATTGCTGGAGCCCTCATGGGTTTGAGTTCAGTAGGGG
upper sequence: GLYMA05G24520.1 (Glycine max), 3'ss of exon 13
lower sequence: PP1S121_53V6.1 (Physcomitrella patens), 3'ss of exon 17
aatgtttctgttcttatttgtgattttgg-----agcatttaa-aatactttattatttttgttattcaactgtcatggtgtaattatacctctatctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCG
| || | || | | | || | ||||| | |||| || | | ||||| | | | | || | | | ||| | ||||| ||| | || | || ||||| | | | || || | |||| ||||||||||||||||| ||||||||||| | || || | || |
--ttctttaatgattttctacggttctcacaataggcattggacaatatcttgaatggtgcgcggttcaattaactt----cagtttttgtgttctttttgtccagGTGGGACTCCCTCTCGCTGCTGGTGCTCTGCTACCTTCAACGAACATCATGCTTACTCCATCAATTGCAGGTGCTCTCATGGGTATAAGCTCTTTGGGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattatttttgttattcaactgtcatggtgtaattatacctctatctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCG
cctctatcttt CT-rich tract
tttttgttattcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgtttctgttcttatttgtgattttggagcatttaaaatactttattatttttgttattcaactgtcatggtgtaattatacctctatctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTGCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGCG
- -gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg