1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...aatattcttcctattcattcatcttgcattcccacttcctctattctcttccactatctgaatctgtttttttttttctcattattgatttcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAG
species | Glycine max |
transcript | GLYMA05G09020.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTATGTGCTG ATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGAEST: gi|193593750|gb|FK547140.1|FK547140
genomic: ATTATGTGCTGgtaagtattg ... tcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGA
EST: TTGTGCGTGTAGCAATTAGTGAAGATCTGCAAAAATCAGATTATGTGCTG ATTAGAGTGGGTGCCCATATATATCCCCAAAATCCAGTTCTTCACATAGGAEST: gi|16997141|gb|BM086513.1|BM086513
genomic: TTGTGCGTGTAGCAATTAGTGAAGATCTGCAAAAATCAGATTATGTGCTGgtaagtattg ... tcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGA
EST: TTGTGCGTGTAGCAATTAGTGAAGATCTGCAAAAATCAGATTATGTGCTG ATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGA
genomic: TTGTGCGTGTAGCAATTAGTGAAGATCTGCAAAAATCAGATTATGTGCTGgtaagtattg ... tcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGA
ctcttccactatctgaatctgtttttttttttctcattattgatttcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAG
tattgat putative branch site (score: 3)
tctgtttttttttttc CT-rich tract
tttttttttttctcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattcttcctattcattcatcttgcattcccacttcctctattctcttccactatctgaatctgtttttttttttctcattattgatttcttttgcagATTAGAGTGGGTGCCCATATATATCCTCAAAATCCAGTTCTTCACATAGGAAGTCCTCTTAACCTAAGCATAAAAG
- - ttcttcc
- - - - - - - -cattcat
- - - - - - - - - - - - - cattccc
- - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctg