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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttccaaagtcctttaacttatagctggccatatatttggtcttctgattactgttattcagGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT

Basic information

species Glycine max
transcript GLYMA05G08170.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 14
------gtaagtatttccaaagtcctttaac--ttatagctggccatatatttggtcttct--gattactgttattcagGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT
       | || ||||| |  ||    |  |  | ||   |      |  | |   | |||   || |     || |||||||| || || || |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||  | || ||||||||||| ||||  ||    |
gtaaggctgagcatttctatggttacatggccatcattttttttttaacctcttaccctctctaataagctgcatgcagGTTGTTGCATCTCAAGACTGGCCAGAAGTTACAAAGTATGCTGGATTGGTGTGTGCTCAGGCTCATCGGCAAGAGCTCATTCAAGATCTTTACAAGACAT

upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G079080_T02 (Zea mays), 3'ss of exon 14
-------------------------------gtaagtatttccaaagtcctttaacttatagctggccatatatttggtct-----------tctgattactgttattca--gGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT
                                | | ||| ||  |  | | | |   |||      || ||| |||| ||            ||||  |  |  |  |||  |||||| || || || || ||||||||||| ||||| ||||| |||||||| ||||||||| | || ||  | || ||||||||||||||||  |||   |
gtaaggctcgttactactttgccatttcttcatcaatatgtc--acattcatcaggatatgcacatccttatttttgttccgaacttatctgtctgcctctttctgctcacagGTTGTTGCTTCTCAAGATTGGCCAGAAGTTACAAAGTATGCTGGATTGGTTTGTGCTCAGGCACACCGGCAAGAGCTCATTCAAGACCTTTACAAAACAT

upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 13
lower sequence: AC189879.3_FGT003 (Zea mays), 3'ss of exon 13
--------------------------------------gtaagtatttccaaagtcctttaacttatagct-ggccatatatttggtcttctgat-tactgttattcagGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT
                                      || |   |   |||  |      |  | |  || ||   |  | ||      || || | ||| |   |||||||| || || || || ||||||||||| ||||| ||||| |||||||| ||||||||| | || ||  | || |||||||| |||||||  |||   |
gtaaggctcattactactttccatttctgcatcaacatgtcatattcatcaagatatgcacatctttgtcttggttttggacttatctcactcatatgctgctga-cagGTTGTTGCTTCTCAAGATTGGCCAGAAGTTACAAAGTATGCTGGATTGGTTTGTGCTCAGGCACACCGGCAAGAGCTCATTCAGGACCTTTACAAAACAT

upper sequence: GLYMA05G08170.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 14
gtaagtatttccaaagtcctttaacttatagctggccat---atatttg-gtc--ttctgattactgttattcagGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT
||||| || |  |||    | |  |  | |     |  |   || |||| |||  |  |||||||  |||| ||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||| |||||||  | ||||| ||||||||  | | ||||   |
gtaaggatatgaaaacctgtatttcccaaaatctacagttccatgtttgagtccatattgattacaattatacagGTAGTAGCCTCCCAAGACTGGCCAGAAGTCACCAAGTATGCTGGATTGGTATGTGCTCAGGCTCATCGGCAAGAACTTATTCAAGATTTGTATAAAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcctttaacttatagctggccatatatttggtcttctgattactgttattcagGTTGTAGCCTCCCAGGACTGGCCAGAAGTGACAAAATATGCAGGATTGGTATGTGCTCAGCCTCATCGCGAGGAACTCATTCAAGACCTTTTTAAATGTT
                                   ttctgat  putative branch site (score: 3)
     tttaacttata  TA-rich tract