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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagttgtcctcttttattagtcttttcatttgacgacatggccttcatggatttgttcttatgtctttgatgcatgcactgaactaagtgtctttgtatttcagGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGTCTCTCCGTT

Basic information

species Glycine max
transcript GLYMA04G38480.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726955|gb|BW680285.1|BW680285
EST:     TGCCGTCAGTTATGCTAGGTCTGCAGGGACTGAAG                         GCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACT
genomic: TGCCGTCAGTTATGCTAGGTCTGCA-GGACTGAAGgtgaagttgt ... tgtatttcagGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgttcttatgtctttgatgcatgcactgaactaagtgtctttgtatttcagGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGTCTCTCCGTT
               ctttgat  putative branch site (score: 5)
                                       tgtcttt  putative PPT
                                           tttgtattt  TA-rich tract