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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtcttatcttacaagttctttacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACT

Basic information

species Glycine max
transcript GLYMA04G38360.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 13
gttcgaatatgttggagcatctactctttggctttcataggaattgcttgaatgttcttatatatggcataattgacattctgattaactttggaaacctggtc---ttatcttacaagttctttacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACT
|| |  ||   ||  |     | ||||   |||    ||| ||||         || ||  ||  |  || | |    | ||||  || ||  | || |    |   || ||| | ||||| |  |  || ||||| || ||||||||||||||||| |||| | | ||||| |||||||||||||| || ||||| ||  ||||| ||||||||||||||
gtccacatgctttcaactgcat-ctctgctgctcctttagtaatt---------ttatttgatcagtaattaatagattgctgacaaatttcaggaatcacaacacgttctctgataagtt-tacatcttgcagGAAAGGCTTGAGAGAGAATACAACTTGACCTTAATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTATAAATGGTGATACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814694|gb|BI786969.1|BI786969
EST:     TGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAG                         GAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGT
genomic: TGGGTTTCTGGGCCTTCTTCATATGGAAATTGTTCAGgttcgaatat ... tacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctgattaactttggaaacctggtcttatcttacaagttctttacattacagGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACAACTGCTCCAAGTGTCGTGTACAGGGTACACTGTGTAAATGGTGATACT
                                        ttctttac  CT-rich tract
       attaacttt  TA-rich tract