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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcattcaaaaaaatctagtgacacgtactttggcattttatcattactcctctgtctcctcactaaggccaaaataatgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG

Basic information

species Glycine max
transcript GLYMA04G37780.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37780.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 3'ss of exon 13
------------------------------gtactc-attcaaaaaaatcta-gtgacacgtactttggcatt-ttatcattactcctctgtctcctcactaagg--ccaaaataatgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG------
                               || |  ||| | | | || ||  | ||| | | ||| | ||   |  ||    || ||  ||        | |   |   | |   ||||||||| | |||  |||| |||||||||||||| ||||| ||||||||||| || ||  | ||  ||||  | ||| | |        
gtacaaatatttaccagaaatctgttgcatctattttatttagatagatttatattacaggaatttttgaatagctgccagatttcttccttcctaatgacatgcacctctatttgggcagGCAGAGAGTGCGATGGATCAGATGGATTGGATTGAAAAAATAACTGGTGTCATCGCTTCTTTGCTGAGCTCCCAATCGCCCGAACGG

upper sequence: GLYMA04G37780.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G093670_T01 (Zea mays), 3'ss of exon 4
gtactcattcaaaaaaatctagtgacacgtactttg--gcattttatcattactcctctgtctcctcactaaggccaaaata-atgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG------
|||| |   || |    | | |||     | | ||   |  | | || |  | | |  |    | | |  |   |    ||  ||||||||||| | |||  | || |||||||||||||| ||||||||||||||||| |||||| | ||  |||   ||||| | |        
gtacac---cacatgtttatggtgcagtctgccttattgattctgattaagatttcaatactccatgaacacatctgctatttatgcagGCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAG

upper sequence: GLYMA04G37780.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM5G872204_T02 (Zea mays), 3'ss of exon 13
gtactcattcaaaaaaatctagtgacacgtactttggcattttatcattactcctctgtctcctcactaaggccaaaata-atgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG------
       |  |  | ||  |  ||    ||  | | | || | ||||  ||| |  |   || | |  |   |    ||  || |||||||| | |||  | || |||||||| ||||| ||||||||||||||||| |||||| | ||| ||||  ||||| | |        
------gtatagcacaagtttatggtctgtcatattgaatatgatcaagacttccatacttcatgaacatatctgctatttatacagGCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAG

upper sequence: GLYMA04G37780.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 3'ss of exon 13
---------------------------------------------------------------------------------gtactcattcaaaaaaatctagtgacacgtactttggc-attttatcattactc--------ctctgtctcctcactaaggccaaaataatgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG------
                                                                                  |  |||  | ||| | |        ||  |   |||  ||| | ||| |||           ||| ||  ||   ||    ||    |||||||||||| ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||  | || |||||| |  |  ||||       
gtacaaaatcaaaggttagatcaaaaatataaatttgggttttcattcatgtttttagactatacttatatgaagctcagcattatcagcccaaatacttgtccagtactaatgctggggattatgtcagtacctagagcagattctctcaactttatattaacacttgaatgcagGCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttggcattttatcattactcctctgtctcctcactaaggccaaaataatgcagGCAGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCACCTTATTGAGTGCACAAACACTG
                             tcctcac  putative branch site (score: 2)
       attttatcattact  TA-rich tract