1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaagctgtcgtagattttggacttgtcacttatggtaaagatatttataggtatacatgtgcttaaaaggagtttgacttgggattgatgaatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTTCTCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCTTCAGCATATA
species | Glycine max |
transcript | GLYMA04G37370.3 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|21995020|gb|BQ786548.1|BQ786548
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|26269205|gb|CA820268.1|CA820268
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|21678465|gb|BQ630816.1|BQ630816
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTEST: gi|22933109|gb|BU550248.1|BU550248
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
EST: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG GGGTTGAAATTGCATTTGGACTACGCAGGACCACGTTATAATGTGAAAGGT
genomic: ACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAGgtatggtaga ... aatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGT
tataggtatacatgtgcttaaaaggagtttgacttgggattgatgaatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTTCTCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCTTCAGCATATA
gattgat putative branch site (score: 4)
ttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagctgtcgtagattttggacttgtcacttatggtaaagatatttataggtatacatgtgcttaaaaggagtttgacttgggattgatgaatgttgtagGGGTTGAAATTGCATTTGGACTACGCAGGACCACGTGATAATGTGAAAGGTTCTCGTTCAGGAAGTTATGCTTATTCAGATGCATGGGCTTCAGCATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -gctgtcg
- - - - - - - - - - - -tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggattg