1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctcttctaaggaaagctggccatatttacgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG
species | Glycine max |
transcript | GLYMA04G37370.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|192327947|gb|FK022478.1|FK022478
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|26269205|gb|CA820268.1|CA820268
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|21995020|gb|BQ786548.1|BQ786548
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: ATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|20812907|gb|BQ297385.1|BQ297385
genomic: ATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|51341763|gb|CO983080.1|CO983080
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|33390686|gb|CA853881.1|CA853881
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTEST: gi|5678159|gb|AI939289.1|AI939289
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
EST: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTG TATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
genomic: TTCAGAGACTTGGTGATGATATCGATCCTAACAACATACCCCAAATTCTGgtacttttca ... acgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTT
ttgagtgtatattttatcctcttctaaggaaagctggccatatttacgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG
tgtatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttcaagacgtattttatattcttgaggttgagtgtatattttatcctcttctaaggaaagctggccatatttacgattgtagTATGAAGACGAAGATCATGATAAAGTTGTATTGGCTTCAGACAGTGATCTTGCAGCAGCTGTGGATCATGCAAGGACAGCTGGTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG