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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcacttttgcttagaaacttttgagtgtaattgtttttctattattacctttttctcattctattctgtgtgcagATTTCACAACTCAATCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGT

Basic information

species Glycine max
transcript GLYMA04G36700.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36700.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 3'ss of exon 13
gtttcacttttgcttagaaacttttgagtgtaattgttt-ttctattattacctttttctcattctat---------tctgtgtgcagATTTCACAACTCAATCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGT
       ||    |||||||||| |||| || |||| || ||| |  |||  |||||  || |||| |         | ||  ||||||| || ||| | || || || || | ||| ||  |  |||||||||| ||||| ||||| ||||| |||||| |||| |||||||| |||||||||||||
-----gtttgctgttagaaacttgtgagagttattggttgttcaaccattttcttttaatccttctttgcccatgtttttgcctgcagATCTCTCAAATGAACCTGACCTTCAGGGAAATAATTCACAACTACAGGAAGCAGCCACAATGCAAGCCACAAATTTTCCGTAGTGTGTTTGTTGATTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagtgtaattgtttttctattattacctttttctcattctattctgtgtgcagATTTCACAACTCAATCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGT
             tttttctattattacc  CT-rich tract
       taattgtttttctatt  TA-rich tract