1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ggccccattcttgcttcatagtattttctaaaagatacccatcttattttaatatctggtgcatcaatgcataatttgctatcttgtttcttttgtgcagGTGGTATTACTGAAACCCCTTGTCCCTACCAATGTGTTTCGGACAGATATCATATGCCTGATTGTTACACAGCCCTTGAAGAGTTAATTTACAGATTTGG
species | Glycine max |
transcript | GLYMA04G09230.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
attttaatatctggtgcatcaatgcataatttgctatcttgtttcttttgtgcagGTGGTATTACTGAAACCCCTTGTCCCTACCAATGTGTTTCGGACAGATATCATATGCCTGATTGTTACACAGCCCTTGAAGAGTTAATTTACAGATTTGG
ttttaat putative branch site (score: 3)
ctatcttgtttctttt putative PPT
ataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggccccattcttgcttcatagtattttctaaaagatacccatcttattttaatatctggtgcatcaatgcataatttgctatcttgtttcttttgtgcagGTGGTATTACTGAAACCCCTTGTCCCTACCAATGTGTTTCGGACAGATATCATATGCCTGATTGTTACACAGCCCTTGAAGAGTTAATTTACAGATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- ccccatt
- - - - - -tgcttca
- - - - - - - - - - - - - - -aaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatc