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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgatagcattagtcttgataattgatagtaatattttatgatgtactttctttgttcaaccaacttcctgaaataagcagtgaacttaaattgaaaaacaaaatcaagaacattatgtttccttttattctgtttagatatggaataatatggctttttcctcctgatcgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC

Basic information

species Glycine max
transcript GLYMA04G07460.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07460.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
gttagtgatagcattagtcttgataattgatagtaatattttatgatgtactttctttgttcaaccaacttcctgaaataagcagtgaacttaaattgaaaaacaaaatcaagaacattatgtttccttttattctgtttagat-atggaataata--tggctttttcctcctgatcgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC
                       ||| ||  |  |  |||  |  ||   | |   || || ||      |  ||||   |||| | ||| |    ||||     |  ||||   | | ||    | | ||     |||  ||| || ||| ||||  ||   |  |  || | || || ||  | | ||||  || || ||||| |||||  || ||||   |||  |||| |||||||| ||||||   || || |||||||||||||||||||| |||||||| ||||
----------------------gtaagtgccaagaggattaaagtat---cctatattattaaaagtgaatgttgaag--agcactaaacatgtgatgaagggggagctcaaatgcttcat----cgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtcttaaatg-cagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttagatatggaataatatggctttttcctcctgatcgttttgtacgacagGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAGGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC
                                 tcctgat  putative branch site (score: 3)
                         ctttttcctcctgatc  CT-rich tract
         atatggaataatat  TA-rich tract