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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaacttataatttttgtgagggtacaactacaagttcacaagttttctatagatttgacatcactttttaattttgtttgtgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAGCAATAC

Basic information

species Glycine max
transcript GLYMA03G38530.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38530.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 13
----gtgaaacttataatttttgtgagggtacaactacaagttcacaagttttctatagatttgacat---cactttttaattttgtttg--tgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAGCAATAC
     | |||| | |  ||  ||  ||   | |   |    ||  ||    |  | |   ||||  |     |||  |||| | | ||||  |  | ||| |||||||| |  || |||||  | ||  ||||| | ||||| || ||||| |  |||||||||||||||||||| |||||||| || || ||||| || 
ttttcttaaacatttgcttactgcaagaaaatatgcattgattttcactgataatgtgcctttgttacacaaactggttaactgtatttggcttctgcagCTGGGAGACCTACCAACCTGTTAGCGGCCTACTTGCACAGCCTGAGTGGACCGTGTGGGACCAAACCGTTGAGTATTGTGCATTCGCTTATCAGCAGTAT

upper sequence: GLYMA03G38530.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM5G824843_T01 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------------------------------------gtgaaacttataat-ttttgtgagggtacaactacaagttcacaagttttctatagatttgacatcactttttaattttgtttgtgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAGCAATAC
                                                                                                     || ||  | |   |  ||  |     ||  |    ||   |  |  | ||    ||| |  | || || |||||| ||       | | ||| |||||||| | |||||||||  | ||  ||||| | || || || |||||||  ||||||||||| |||||||| ||||||||||| || ||||| || 
gtatatatttaagtatgttctttttacattttatgctagttcctgattcctgtagtgtctggatagttatttcttggctgatacattgctctgatgtacctgtaaagttcactttgcttccttgtactatgatctaaacagctaacatctttgtgagactaaaaattacattttaaatt-------ggtgcagCTGGGAGACCTATCAGCCTGTTAGTGGCCTACTTGCACAACCTGAGTGGACTGTGTGGGACCAAACTGTTGAGTATTGTGCATTTGCTTATCAGCAGTAT

upper sequence: GLYMA03G38530.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgaaact-ta-taatttttgtgagggtacaactacaagttcacaagttttctatag-atttgacatcact----ttttaattttgtttgtgattc--agTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAGCAATAC
   || || || | |||    |     |       | || ||  |  || | |  || |||| |  || ||    | | |||    ||| | ||    |||||||| |  ||| |||| || || ||| | || ||||||||||||||||| || ||||||||||| ||||| |||||||| ||||| || || ||||||
accaatctgtactgattcccatagttatgttttggctagctctaattttgtttgaaggatttcagttctctattatctaaatggaatttttaatgtgtagTTGGGAAAATTTTGAGCCAGTAGGTGGTATGCTACCTCAGCCAGAATGGACGGCATGGGACCAAACAGTTGAATACTGTGCTTTTGCTTATCAACAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcacaagttttctatagatttgacatcactttttaattttgtttgtgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAGCAATAC
                                ttttaat  putative branch site (score: 3)
                                      ttttgttt  CT-rich tract
                               tttttaattttgtttg  TA-rich tract