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...atttaaagctcaactcttgggaggtacatactgtgatagaaattatccttcttttcacgcgcatgaggttttaaatgtatcttatgttatccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGATGGTGGAACTTCACTCACTGCAATAGCAAAATGTATATTTTTGTATTA
species | Glycine max |
transcript | GLYMA03G32620.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGEST: gi|13240435|gb|BG359744.1|BG359744
genomic: TGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
EST: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGEST: gi|254330519|gb|GR841784.1|GR841784
genomic: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
EST: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGEST: gi|193665311|gb|FK613889.1|FK613889
genomic: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
EST: TGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGEST: gi|8401969|gb|BE057603.1|BE057603
genomic: TGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
EST: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGEST: gi|13480824|gb|BG510167.1|BG510167
genomic: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
EST: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG CTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
genomic: ACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATGgtaagccttc ... ccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCG
tccttcttttcacgcgcatgaggttttaaatgtatcttatgttatccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGATGGTGGAACTTCACTCACTGCAATAGCAAAATGTATATTTTTGTATTA
ttatcccc CT-rich tract
ttttaaatgtatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaaagctcaactcttgggaggtacatactgtgatagaaattatccttcttttcacgcgcatgaggttttaaatgtatcttatgttatccccatgcagCTGTCTCTGCTGATGATCTGCACAAACATAAATGCTGAGCCCATGCAACCGATGGTGGAACTTCACTCACTGCAATAGCAAAATGTATATTTTTGTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA