Sequence
atgc intronic sequence ATGC exonic sequencegttatagtcaaatacctcttcattttattagaatatattttgtgcaatactgagtctttagttttgtagAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
Basic information
species | Glycine max |
transcript | GLYMA03G31820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G31820.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM5G831712_T02 (Zea mays), 3'ss of exon 12
-------------------------gttatagtcaaatacctcttcatttta-----ttagaatatattttgtgcaatactgagtctttagttttgt-agAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
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acttatgggttatgttgggtttttaactttagccaacttgcttgggattaaaaggctttattgttgttcctctattaaagtaagcctttttttttgccagAGCTGCTATGATGGAATTTGAAATTAATATGTCAGAAATGCCTCTTGGGAAGCTAAGCAAGGAAAATATTGAGAAAG
upper sequence: GLYMA03G31820.1 (Glycine max), 3'ss of exon 13
lower sequence: AT2G31320.1 (Arabidopsis thaliana), 3'ss of exon 11
---------------gttatagtcaaatacctct-tcattttattagaatatattttgtgcaatactgagtctttagttttgtagAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
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gttagaaacttatttgccattgtcttcttctcctcttctctccctagaaactgtatgaagtaa--cctaataattacttccgcagATCTGCAATGATGGAGTTCGAGATAAATATGTCAGAGATGCCACTTGGGAAGCTCAGCAAACATAATATACAGAAGG
upper sequence: GLYMA03G31820.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv07s0005g03040.t01 (Vitis vinifera), 3'ss of exon 12
gttatagtcaaatacctcttcattt---tattagaatatattttgtgcaatactgagtct------------ttagttttgtagAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
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gttattgcaaattatcttgtcttttctcttttgggatttattcc-tagaaaattgtatctgaaatactgaaataagtcttgcagATCTGCCATGATGGAATTTGAAATTAATATGTCAGAAATGCCACTTGGAAAGCTGAGTAAAAGTAACATACAGAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctcttcattttattagaatatattttgtgcaatactgagtctttagttttgtagAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
attttattagaatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttatagtcaaatacctcttcattttattagaatatattttgtgcaatactgagtctttagttttgtagAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA